I ended up using this project: http://www.rabidhardware.net/index.php?id=5
This essentially makes a scewed triangle wave, where the rise time is quicker than the fall time, creating a “breathing” effect.
There are a couple of other circuits that do similar things:
http://www.instructables.com/id/How_to_blinkbreathing_style_LED_while_you_are_p/
http://www.cpemma.co.uk/throbber.html
Of course, making a variable duty cycle PWM program with a microcontroller might end up better next time since I can control more LED’s with less.
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